Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70803643..70805541-chr7:70808294..70809904,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10224696	0.97[EUR][1000 genomes]
rs10240080	0.97[EUR][1000 genomes]
rs10252095	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281560	0.97[EUR][1000 genomes]
rs12532676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12540683	0.97[EUR][1000 genomes]
rs12699007	0.82[AMR][1000 genomes]
rs12699008	0.82[AMR][1000 genomes]
rs12699011	0.91[AMR][1000 genomes]
rs12699012	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12699013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143419	0.90[EUR][1000 genomes]
rs2707422	0.93[EUR][1000 genomes]
rs34702051	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35182494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56340632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62462209	0.92[EUR][1000 genomes]
rs71549400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803373	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:70794600-70806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:70794800-70804800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:70796000-70804200	Weak transcription	Ovary	ovary
6	chr7:70799400-70805000	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:70799600-70804800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:70801600-70805000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:70801600-70812600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:70801800-70804800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:70801800-70805000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:70801800-70807600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:70802000-70804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:70802000-70804800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:70802000-70806800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:70802200-70804000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:70802200-70804800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:70802200-70807600	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search: