Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:60969936..60971835-chr7:70814518..70816806,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149679	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252095	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs10281560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532676	0.97[EUR][1000 genomes]
rs12540683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12699012	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs12699013	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12699032	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17143419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707422	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34702051	0.86[EUR][1000 genomes]
rs35182494	0.97[EUR][1000 genomes]
rs56340632	0.97[EUR][1000 genomes]
rs57307767	0.87[ASN][1000 genomes]
rs62462185	0.97[EUR][1000 genomes]
rs62462209	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955324	0.87[ASN][1000 genomes]
rs71549400	0.97[EUR][1000 genomes]
rs73358169	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73358172	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7803373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70814400-70816200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:70814600-70817600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:70814600-70818400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70814800-70816000	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:70814800-70821800	Weak transcription	Pancreas	Pancrea
6	chr7:70814800-70828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70814800-70829400	Weak transcription	Ovary	ovary
8	chr7:70815000-70826000	Weak transcription	Fetal Heart	heart
9	chr7:70815400-70816400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:70815600-70819400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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