Variant report

Variant	rs2707422
Chromosome Location	chr7:70830063-70830064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224696	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240080	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252095	0.93[EUR][1000 genomes]
rs10281560	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532676	0.93[EUR][1000 genomes]
rs12540683	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12699012	0.82[EUR][1000 genomes]
rs12699013	0.93[EUR][1000 genomes]
rs12699032	0.93[EUR][1000 genomes]
rs17143419	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34702051	0.82[EUR][1000 genomes]
rs35182494	0.93[EUR][1000 genomes]
rs56340632	0.93[EUR][1000 genomes]
rs57307767	0.87[ASN][1000 genomes]
rs62462185	0.93[EUR][1000 genomes]
rs62462209	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955324	0.87[ASN][1000 genomes]
rs71549400	0.93[EUR][1000 genomes]
rs73358169	1.00[ASN][1000 genomes]
rs73358172	1.00[ASN][1000 genomes]
rs7803373	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70827200-70835000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:70828800-70830200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr7:70829000-70831800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:70829600-70830200	Weak transcription	Ovary	ovary
5	chr7:70829600-70838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:70829800-70831000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:70829800-70837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:70830000-70831400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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