Variant report

Variant	rs11979730
Chromosome Location	chr7:70805243-70805244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70803643..70805541-chr7:70808294..70809904,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11976002	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11976167	0.82[MEX][hapmap]
rs11978607	0.86[EUR][1000 genomes]
rs11979360	1.00[EUR][1000 genomes]
rs11979633	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11981382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17137550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4236244	0.86[EUR][1000 genomes]
rs4719103	0.83[JPT][hapmap]
rs55689924	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57060537	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58203463	0.86[EUR][1000 genomes]
rs58783760	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61211862	1.00[EUR][1000 genomes]
rs61445616	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73358104	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73358107	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73358144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73358150	1.00[EUR][1000 genomes]
rs73700697	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73700698	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73700699	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73700700	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73700702	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7799967	1.00[GIH][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70794600-70806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:70801600-70812600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70801800-70807600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:70802000-70806800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:70802200-70807600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:70804000-70805400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70804200-70805600	Enhancers	Ovary	ovary
9	chr7:70804600-70805600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:70804800-70805400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:70804800-70805400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70804800-70805600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:70804800-70805600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:70805000-70805400	Enhancers	Fetal Muscle Leg	muscle
15	chr7:70805000-70805600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:70805000-70813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:70805200-70813400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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