Variant report

Variant	rs17137550
Chromosome Location	chr7:70776867-70776868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11976002	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976167	0.82[MEX][hapmap]
rs11978607	1.00[EUR][1000 genomes]
rs11979360	0.86[EUR][1000 genomes]
rs11979633	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11979730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11981382	0.86[EUR][1000 genomes]
rs4236244	1.00[EUR][1000 genomes]
rs4719103	0.83[JPT][hapmap]
rs55689924	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57060537	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58203463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58783760	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61211862	0.86[EUR][1000 genomes]
rs61445616	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73358104	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73358107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73358144	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73358150	0.86[EUR][1000 genomes]
rs73700697	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700698	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700699	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700700	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700702	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7799967	1.00[GIH][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70773600-70778400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:70773600-70778400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70773600-70778400	Weak transcription	Fetal Lung	lung
7	chr7:70773800-70778200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:70773800-70778400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:70774000-70779800	Weak transcription	Fetal Stomach	stomach
10	chr7:70774400-70777000	Weak transcription	Ovary	ovary
11	chr7:70774400-70778400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:70775400-70777200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:70775400-70777200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr7:70775400-70777400	Enhancers	Fetal Muscle Leg	muscle
15	chr7:70775600-70777000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:70775600-70777000	Enhancers	Left Ventricle	heart
17	chr7:70775600-70777000	Enhancers	Right Ventricle	heart
18	chr7:70775800-70777400	Enhancers	Rectal Smooth Muscle	rectum
19	chr7:70776200-70777000	Enhancers	Brain Anterior Caudate	brain
20	chr7:70776600-70777200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:70776600-70777600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:70776800-70777000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr7:70776800-70777200	Enhancers	Colon Smooth Muscle	Colon
24	chr7:70776800-70777400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links