Variant report

Variant	rs4236244
Chromosome Location	chr7:70748404-70748405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11976002	1.00[EUR][1000 genomes]
rs11978607	1.00[EUR][1000 genomes]
rs11979360	0.86[EUR][1000 genomes]
rs11979633	0.86[EUR][1000 genomes]
rs11979730	0.86[EUR][1000 genomes]
rs11981382	0.86[EUR][1000 genomes]
rs17137550	1.00[EUR][1000 genomes]
rs4719098	0.97[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs55689924	0.86[EUR][1000 genomes]
rs57060537	1.00[EUR][1000 genomes]
rs58203463	1.00[EUR][1000 genomes]
rs61211862	0.86[EUR][1000 genomes]
rs61445616	0.86[EUR][1000 genomes]
rs73358104	1.00[EUR][1000 genomes]
rs73358107	1.00[EUR][1000 genomes]
rs73358144	0.86[EUR][1000 genomes]
rs73358150	0.86[EUR][1000 genomes]
rs73700697	1.00[EUR][1000 genomes]
rs73700698	1.00[EUR][1000 genomes]
rs73700699	0.86[EUR][1000 genomes]
rs73700700	0.86[EUR][1000 genomes]
rs73700702	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70732400-70755400	Weak transcription	Right Atrium	heart
2	chr7:70739800-70750600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:70740000-70751600	Weak transcription	Left Ventricle	heart
4	chr7:70741200-70750600	Weak transcription	Ovary	ovary
5	chr7:70743600-70750200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70745400-70750600	Weak transcription	Pancreas	Pancrea
7	chr7:70745800-70755000	Weak transcription	Fetal Heart	heart
8	chr7:70746800-70748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70747400-70750600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:70747600-70749800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70747600-70750000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:70747600-70750000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:70747600-70750200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:70747600-70750400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:70747600-70751000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:70747800-70750400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:70748000-70750000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:70748000-70751400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:70748000-70751400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:70748000-70751600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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