Variant report

Variant	rs73358107
Chromosome Location	chr7:70780721-70780722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11976002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978607	1.00[EUR][1000 genomes]
rs11979360	0.86[EUR][1000 genomes]
rs11979633	0.86[EUR][1000 genomes]
rs11979730	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11981382	0.86[EUR][1000 genomes]
rs17137550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236244	1.00[EUR][1000 genomes]
rs55689924	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57060537	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58203463	1.00[EUR][1000 genomes]
rs58783760	0.98[ASN][1000 genomes]
rs61211862	0.86[EUR][1000 genomes]
rs61445616	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73358104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73358144	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73358150	0.86[EUR][1000 genomes]
rs73700697	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700698	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700699	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700700	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73700702	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70778800-70784400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:70779200-70782200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:70779800-70780800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr7:70780200-70781800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:70780600-70781200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:70780600-70781200	ZNF genes & repeats	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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