Variant report

Variant	rs10245173
Chromosome Location	chr7:70860990-70860991
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10216049	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs10241279	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10258157	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267558	1.00[CEU][hapmap]
rs10272342	1.00[CEU][hapmap]
rs10278132	1.00[CEU][hapmap]
rs11976077	1.00[CEU][hapmap]
rs12540623	1.00[CEU][hapmap]
rs2068591	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2960870	1.00[CEU][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4421255	1.00[CEU][hapmap]
rs73362017	0.83[EUR][1000 genomes]
rs917111	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70850800-70862200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:70853400-70885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:70854800-70868400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70856000-70862200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:70856200-70862400	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:70856400-70867800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70857600-70862400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:70857800-70861400	Weak transcription	Left Ventricle	heart
9	chr7:70858800-70864200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:70860200-70861800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr7:70860600-70861400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr7:70860800-70865800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:70860800-70869600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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