Variant report

Variant	rs10241279
Chromosome Location	chr7:70897363-70897364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10216049	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10225288	0.80[EUR][1000 genomes]
rs10245173	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10258157	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10267558	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10272342	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10278132	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11976077	1.00[CEU][hapmap]
rs12540623	1.00[CEU][hapmap]
rs2960870	1.00[CEU][hapmap]
rs4421255	1.00[CEU][hapmap]
rs73362017	0.96[EUR][1000 genomes]
rs73363781	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365659	0.80[EUR][1000 genomes]
rs73365677	0.80[EUR][1000 genomes]
rs917111	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70879400-70899000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70880000-70897600	Weak transcription	Right Ventricle	heart
3	chr7:70880800-70899200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70881000-70901200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:70886200-70903600	Weak transcription	Aorta	Aorta
6	chr7:70888200-70923000	Weak transcription	Ovary	ovary
7	chr7:70889600-70898200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:70889600-70907600	Weak transcription	Fetal Lung	lung
9	chr7:70891600-70901000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:70891800-70907400	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:70892800-70899000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:70892800-70901800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:70894200-70897800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:70894200-70899000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:70894800-70901800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:70896200-70898400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:70896400-70897400	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr7:70896400-70897400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:70896400-70897400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:70896400-70898000	Strong transcription	Fetal Stomach	stomach
21	chr7:70896400-70898400	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr7:70896400-70898600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:70896400-70899800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:70896600-70898400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr7:70897000-70897400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:70897200-70897400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links