Variant report

Variant	rs10272342
Chromosome Location	chr7:70922061-70922062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10216049	1.00[CEU][hapmap]
rs10225288	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241279	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10245173	1.00[CEU][hapmap]
rs10258157	1.00[CEU][hapmap]
rs10267558	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10268108	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10278132	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11764267	1.00[CEU][hapmap]
rs11976077	1.00[CEU][hapmap]
rs12540623	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28483889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28676380	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2960870	1.00[CEU][hapmap]
rs4421255	1.00[CEU][hapmap]
rs4719098	1.00[CEU][hapmap]
rs57449818	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73363781	0.80[EUR][1000 genomes]
rs73365659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73365677	1.00[EUR][1000 genomes]
rs73365680	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73365688	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73367513	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs917111	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70888200-70923000	Weak transcription	Ovary	ovary
2	chr7:70905000-70929000	Weak transcription	Right Atrium	heart
3	chr7:70908400-70922400	Weak transcription	Fetal Stomach	stomach
4	chr7:70908400-70935200	Weak transcription	Fetal Lung	lung
5	chr7:70908600-70923000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:70909200-70922200	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:70916000-70926400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:70920000-70922800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70920000-70925200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:70920200-70925200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70920400-70926000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70921200-70923000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:70921600-70922600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:70921600-70922600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:70921600-70925400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:70921600-70927000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:70921800-70922200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr7:70921800-70922200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:70921800-70922800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:70921800-70923400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:70922000-70922200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr7:70922000-70922400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr7:70922000-70923000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr7:70922000-70923000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:70922000-70924600	Enhancers	Fetal Heart	heart

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