Variant report

Variant	rs28676380
Chromosome Location	chr7:70945769-70945770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10225288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10236816	0.84[AFR][1000 genomes]
rs10267558	0.88[EUR][1000 genomes]
rs10268108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272342	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10278132	0.88[EUR][1000 genomes]
rs12540623	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57449818	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73365659	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73365677	0.88[EUR][1000 genomes]
rs73365680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73365685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73365688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367531	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70940200-70951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:70940600-70946000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:70941400-70953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:70943800-70946000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:70943800-70946600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:70944000-70962200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:70944200-70962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:70944600-70946600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:70944800-70946000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:70944800-70951600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:70945000-70954200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:70945200-70946800	Enhancers	Pancreas	Pancrea
13	chr7:70945400-70946200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:70945400-70947000	Enhancers	Fetal Muscle Leg	muscle
15	chr7:70945400-70962000	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links