Variant report

Variant	rs73365688
Chromosome Location	chr7:70936872-70936873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10225288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10236816	0.81[AFR][1000 genomes]
rs10267558	0.88[EUR][1000 genomes]
rs10268108	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272342	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10278132	0.88[EUR][1000 genomes]
rs12540623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28676380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57449818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73365659	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73365677	0.88[EUR][1000 genomes]
rs73365680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73365685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70927200-70937800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:70933000-70937200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70934800-70939400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:70935000-70939200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:70935000-70939400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:70935200-70938800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:70935200-70939200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:70935200-70939200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:70935200-70939400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:70935600-70939000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:70935800-70937400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:70935800-70941400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:70936200-70937000	Enhancers	Fetal Lung	lung
14	chr7:70936400-70937000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr7:70936400-70939600	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:70936600-70939800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:70936800-70937200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:70936800-70937800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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