Variant report

Variant	rs17526796
Chromosome Location	chr6:150536182-150536183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1086204	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17527128	0.84[AMR][1000 genomes]
rs34163668	1.00[AFR][1000 genomes]
rs789497	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150533400-150541400	Weak transcription	Fetal Brain Female	brain
5	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
6	chr6:150534400-150538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150534600-150536200	Weak transcription	HMEC	breast
8	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
9	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:150535600-150541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150535800-150537000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150535800-150537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150536000-150537200	Strong transcription	NHEK	skin
14	chr6:150536000-150540200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:150536000-150540800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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