Variant report

Variant	rs17526825
Chromosome Location	chr1:193128009-193128010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193121417..193124500-chr1:193124689..193128530,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10494675	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10801170	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10801186	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10921331	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12119992	1.00[CEU][hapmap]
rs12122868	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12123069	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12123511	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12123750	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12123793	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12123970	1.00[CEU][hapmap]
rs12124921	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12124924	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12128125	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12129126	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12132305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12134846	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12135148	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12135670	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12137391	1.00[AFR][1000 genomes]
rs12141029	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12141336	1.00[AFR][1000 genomes]
rs12141559	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12143361	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12143573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145101	1.00[ASW][hapmap];0.85[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145609	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12145761	1.00[AFR][1000 genomes]
rs1325196	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17592121	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17592633	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17593120	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2887640	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs28930673	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28930674	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs528790	1.00[CEU][hapmap]
rs6663374	1.00[AFR][1000 genomes]
rs6667917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682904	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs72731058	0.91[EUR][1000 genomes]
rs72731066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72731068	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72740227	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72740228	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72740230	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72740261	1.00[AFR][1000 genomes]
rs72740270	1.00[AFR][1000 genomes]
rs7415619	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193092600-193141600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:193094800-193155000	Weak transcription	Aorta	Aorta
3	chr1:193101000-193140000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:193101400-193130000	Weak transcription	Colonic Mucosa	Colon
5	chr1:193104200-193135000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:193106000-193140800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:193109600-193128200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:193110000-193139600	Weak transcription	Esophagus	oesophagus
9	chr1:193110000-193149400	Weak transcription	Right Ventricle	heart
10	chr1:193110000-193155200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:193111600-193137600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:193115600-193130000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr1:193115800-193142000	Weak transcription	Spleen	Spleen
14	chr1:193116000-193132200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:193116600-193149400	Weak transcription	Brain Germinal Matrix	brain
16	chr1:193117200-193131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:193118000-193147800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:193119600-193137600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:193120200-193141600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:193120400-193150400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:193120600-193135800	Weak transcription	Psoas Muscle	Psoas
22	chr1:193120600-193142000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:193120800-193129800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:193121000-193143800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:193121000-193155200	Weak transcription	Pancreas	Pancrea
26	chr1:193121200-193132200	Weak transcription	Fetal Stomach	stomach
27	chr1:193121600-193137400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:193122400-193142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:193123200-193128200	Weak transcription	Placenta	Placenta
30	chr1:193123200-193140000	Weak transcription	Ovary	ovary
31	chr1:193123200-193147400	Weak transcription	Fetal Brain Female	brain
32	chr1:193123200-193151600	Weak transcription	Fetal Kidney	kidney
33	chr1:193123200-193153600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr1:193123400-193130000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:193123400-193131600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:193123400-193131600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:193123400-193133800	Weak transcription	HMEC	breast
38	chr1:193123400-193139000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:193123400-193140000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:193123400-193140000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:193123400-193140000	Weak transcription	HSMMtube	muscle
42	chr1:193123400-193142000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr1:193123400-193143000	Weak transcription	Lung	lung
44	chr1:193123400-193147600	Weak transcription	Fetal Brain Male	brain
45	chr1:193123400-193155200	Weak transcription	Thymus	Thymus
46	chr1:193123600-193140000	Weak transcription	Fetal Lung	lung
47	chr1:193123600-193149600	Weak transcription	Brain Hippocampus Middle	brain
48	chr1:193123800-193128200	Weak transcription	Osteobl	bone
49	chr1:193123800-193141600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:193123800-193141800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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