Variant report

Variant	rs528790
Chromosome Location	chr1:193270488-193270489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10494675	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10801186	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs10921331	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12116651	0.80[EUR][1000 genomes]
rs12119992	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12122868	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12123069	0.89[EUR][1000 genomes]
rs12123511	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12123750	1.00[CEU][hapmap]
rs12123793	0.83[EUR][1000 genomes]
rs12124921	0.89[EUR][1000 genomes]
rs12124924	0.89[EUR][1000 genomes]
rs12129126	0.89[EUR][1000 genomes]
rs12135148	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12135670	1.00[CEU][hapmap]
rs12137353	0.80[EUR][1000 genomes]
rs12137391	0.97[EUR][1000 genomes]
rs12141029	1.00[CEU][hapmap]
rs12141336	0.97[EUR][1000 genomes]
rs12141559	0.83[EUR][1000 genomes]
rs12143361	0.83[EUR][1000 genomes]
rs12145101	0.85[CEU][hapmap]
rs12145609	0.83[EUR][1000 genomes]
rs12145761	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1325196	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17526825	1.00[CEU][hapmap]
rs17528639	0.97[EUR][1000 genomes]
rs17529089	0.80[EUR][1000 genomes]
rs17592121	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17592633	0.83[EUR][1000 genomes]
rs17593120	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17593414	0.97[EUR][1000 genomes]
rs28930673	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs28930674	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6663374	0.97[EUR][1000 genomes]
rs6682904	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6685991	0.97[EUR][1000 genomes]
rs72740227	0.89[EUR][1000 genomes]
rs72740228	0.89[EUR][1000 genomes]
rs72740230	0.89[EUR][1000 genomes]
rs72740243	0.97[EUR][1000 genomes]
rs72740246	0.97[EUR][1000 genomes]
rs72740259	0.97[EUR][1000 genomes]
rs72740261	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72740270	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72740276	0.97[EUR][1000 genomes]
rs72740302	0.80[EUR][1000 genomes]
rs7525157	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs817137	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193255200-193280400	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links