Variant report

Variant	rs17529705
Chromosome Location	chr4:20044455-20044456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13148770	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs35099169	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20043600-20046400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:20044000-20044600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:20044000-20045800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:20044200-20045000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:20044200-20045400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:20044200-20045400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:20044200-20045800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:20044200-20045800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:20044200-20046000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:20044400-20045000	Flanking Active TSS	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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