Variant report

Variant	rs17530287
Chromosome Location	chr6:143585300-143585301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12527382	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs17072398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17072414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445591	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs72990444	0.85[ASN][1000 genomes]
rs72990459	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:143569200-143586600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
5	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
6	chr6:143576200-143585800	Weak transcription	Fetal Lung	lung
7	chr6:143579000-143585600	Weak transcription	Fetal Stomach	stomach
8	chr6:143579800-143589400	Weak transcription	Left Ventricle	heart
9	chr6:143581000-143585600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:143582200-143586200	Weak transcription	NHDF-Ad	bronchial
11	chr6:143582400-143585600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:143582400-143587600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:143582400-143590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:143582400-143591800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:143582600-143591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:143582600-143591200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
18	chr6:143583800-143588800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:143583800-143615400	Weak transcription	K562	blood
20	chr6:143584000-143586200	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:143584000-143588200	Weak transcription	Liver	Liver

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