Variant report

Variant	rs72990444
Chromosome Location	chr6:143558847-143558848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143558615..143561242-chr6:143564166..143566111,3	K562	blood:
2	chr6:143558017..143560318-chr6:143769334..143772259,2	K562	blood:
3	chr6:143547341..143549506-chr6:143558186..143560896,2	K562	blood:
4	chr6:143557083..143562017-chr6:143562858..143567253,5	K562	blood:
5	chr6:143544257..143547136-chr6:143557817..143559656,2	K562	blood:

Variant related genes	Relation type
ENSG00000034693	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000223203	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17072398	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17072414	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17445591	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17529996	0.90[EUR][1000 genomes]
rs17530287	0.85[ASN][1000 genomes]
rs72990459	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7740600	0.87[EUR][1000 genomes]
rs7740762	0.87[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
5	chr6:143546000-143576200	Weak transcription	HepG2	liver
6	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143548000-143559400	Weak transcription	NHEK	skin
8	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143550800-143559400	Weak transcription	K562	blood
10	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
11	chr6:143555000-143559400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:143555000-143559600	Weak transcription	Liver	Liver
13	chr6:143555400-143562000	Weak transcription	Ovary	ovary
14	chr6:143556000-143560000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:143556200-143565600	Weak transcription	HMEC	breast
16	chr6:143557600-143559000	Enhancers	Adipose Nuclei	Adipose
17	chr6:143557600-143560800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:143557600-143561200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:143557600-143574000	Weak transcription	Left Ventricle	heart
20	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:143557800-143564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:143557800-143567000	Weak transcription	Fetal Intestine Small	intestine
23	chr6:143558000-143561600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:143558000-143562000	Weak transcription	NHDF-Ad	bronchial
25	chr6:143558600-143559800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:143558800-143561200	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links