Variant report

Variant	rs17536339
Chromosome Location	chr6:119634989-119634990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119628759..119633610-chr6:119634034..119636665,6	MCF-7	breast:
2	chr6:119630356..119635588-chr6:119947996..119951157,4	K562	blood:
3	chr6:119631576..119635032-chr6:119667472..119671213,7	K562	blood:
4	chr6:119559906..119562568-chr6:119632947..119635233,2	K562	blood:
5	chr6:119511695..119514297-chr6:119634255..119636425,2	K562	blood:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17442217	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17442238	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17442343	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17442478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17442505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17514202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17526989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17527003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17527153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17619366	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2038768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798611	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56320899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911026	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6926266	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933973	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6941142	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73769010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73769011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740521	1.00[EUR][1000 genomes]
rs7740969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748940	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481896	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489640	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489641	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489642	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489643	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489647	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489652	0.88[EUR][1000 genomes]
rs9489655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119602600-119635600	Weak transcription	Esophagus	oesophagus
2	chr6:119617200-119637400	Weak transcription	Aorta	Aorta
3	chr6:119625200-119635600	Weak transcription	Psoas Muscle	Psoas
4	chr6:119625200-119668600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:119627200-119636800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:119627800-119635600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:119627800-119667000	Weak transcription	Gastric	stomach
8	chr6:119628000-119635800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:119629200-119637000	Enhancers	Adipose Nuclei	Adipose
10	chr6:119630400-119635200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:119630400-119635200	Weak transcription	Osteobl	bone
12	chr6:119630400-119637800	Genic enhancers	HepG2	liver
13	chr6:119630800-119635400	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:119630800-119636600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:119631600-119636400	Enhancers	Left Ventricle	heart
16	chr6:119631600-119637800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:119631800-119636000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:119631800-119636000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:119632000-119636600	Enhancers	Brain Anterior Caudate	brain
20	chr6:119632000-119638400	Weak transcription	Fetal Kidney	kidney
21	chr6:119632200-119635200	Weak transcription	NHLF	lung
22	chr6:119632200-119636000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:119632200-119636200	Enhancers	Right Ventricle	heart
24	chr6:119632200-119638400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:119632600-119635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:119632800-119636200	Enhancers	Right Atrium	heart
27	chr6:119632800-119647200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:119633000-119635800	Weak transcription	NHDF-Ad	bronchial
29	chr6:119633000-119637400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:119633000-119647200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:119633200-119637400	Enhancers	Primary B cells from cord blood	blood
32	chr6:119633200-119637400	Enhancers	Fetal Thymus	thymus
33	chr6:119633400-119635600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:119633400-119636200	Flanking Active TSS	K562	blood
35	chr6:119633600-119635200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr6:119633600-119635200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:119633600-119635800	Enhancers	Fetal Intestine Small	intestine
38	chr6:119633600-119636200	Enhancers	Placenta	Placenta
39	chr6:119633600-119636200	Enhancers	Spleen	Spleen
40	chr6:119633600-119637800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr6:119633800-119636200	Enhancers	Fetal Muscle Leg	muscle
42	chr6:119633800-119636200	Enhancers	Lung	lung
43	chr6:119633800-119636600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr6:119633800-119636600	Enhancers	Liver	Liver
45	chr6:119633800-119637200	Enhancers	Primary B cells from peripheral blood	blood
46	chr6:119633800-119637400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr6:119634000-119636000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:119634000-119636200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:119634000-119636400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:119634000-119637000	Flanking Active TSS	GM12878-XiMat	blood

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