Variant report

Variant	rs9489651
Chromosome Location	chr6:119598579-119598580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119590898..119593723-chr6:119598543..119602207,4	K562	blood:
2	chr6:119598343..119601299-chr6:119603608..119605157,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17442217	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17442238	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17442343	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17442478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17442505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17514202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17526989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17527003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17527153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17536339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17619366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2038768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798611	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56320899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911026	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6926266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933973	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6941142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73769010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73769011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740521	1.00[EUR][1000 genomes]
rs7740969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489640	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489641	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489642	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489643	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9489644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489652	0.88[EUR][1000 genomes]
rs9489655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119558800-119602000	Weak transcription	Gastric	stomach
2	chr6:119589200-119598600	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:119589200-119611000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:119590600-119621800	Weak transcription	Placenta	Placenta
5	chr6:119590800-119617400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:119590800-119626600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:119591000-119599800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:119591000-119599800	Weak transcription	Lung	lung
9	chr6:119591000-119600600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:119591000-119624200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:119591200-119602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:119591200-119604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:119591400-119601400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:119592000-119602200	Weak transcription	Left Ventricle	heart
15	chr6:119592000-119604200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:119592200-119622200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:119592400-119601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:119592400-119604800	Weak transcription	Fetal Intestine Large	intestine
19	chr6:119592400-119610600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:119592400-119620800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:119592400-119633600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:119592600-119622200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:119592600-119627200	Weak transcription	Dnd41	blood
24	chr6:119593000-119599800	Weak transcription	Aorta	Aorta
25	chr6:119593000-119622200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:119593000-119624800	Weak transcription	Fetal Thymus	thymus
27	chr6:119593000-119626800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:119593200-119604600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:119594200-119605000	Strong transcription	HepG2	liver
30	chr6:119594600-119598600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:119595400-119601600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:119596800-119598600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:119597200-119627400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:119597600-119598600	Weak transcription	Liver	Liver
35	chr6:119597600-119598800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:119597600-119604800	Weak transcription	GM12878-XiMat	blood
37	chr6:119597600-119610800	Weak transcription	Fetal Kidney	kidney
38	chr6:119597800-119599200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:119597800-119599200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:119597800-119599800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:119597800-119600000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:119597800-119601400	Weak transcription	Osteobl	bone
43	chr6:119597800-119602000	Weak transcription	NHLF	lung
44	chr6:119597800-119604400	Weak transcription	Primary B cells from cord blood	blood
45	chr6:119598000-119598600	Strong transcription	K562	blood
46	chr6:119598000-119600600	Weak transcription	Adipose Nuclei	Adipose
47	chr6:119598000-119601200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:119598200-119599400	Weak transcription	Fetal Lung	lung
49	chr6:119598200-119601400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:119598400-119601000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links