Variant report

Variant	rs1755045
Chromosome Location	chr6:33429483-33429484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33399216..33401242-chr6:33429198..33431670,2	K562	blood:
2	chr6:33425270..33426950-chr6:33428718..33430571,2	MCF-7	breast:
3	chr6:33423454..33426241-chr6:33429192..33432961,4	MCF-7	breast:
4	chr6:33421135..33425238-chr6:33425699..33429689,6	K562	blood:
5	chr6:33219097..33221365-chr6:33427098..33429483,3	K562	blood:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction
ENSG00000197283	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11757273	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12204193	0.84[ASN][1000 genomes]
rs1613451	0.86[ASN][1000 genomes]
rs1755046	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1755047	0.86[ASN][1000 genomes]
rs1755048	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1755049	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2076775	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211456	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2247385	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274730	0.85[ASN][1000 genomes]
rs2480487	0.85[ASN][1000 genomes]
rs2747477	0.84[ASN][1000 genomes]
rs2747479	0.84[ASN][1000 genomes]
rs2772373	0.88[ASN][1000 genomes]
rs2772375	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2772376	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2772387	0.85[ASN][1000 genomes]
rs2772389	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2772390	0.85[ASN][1000 genomes]
rs2772391	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2772392	0.86[ASN][1000 genomes]
rs3130025	0.85[ASN][1000 genomes]
rs371005	0.81[ASN][1000 genomes]
rs411136	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs442745	0.84[ASN][1000 genomes]
rs453590	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4620113	0.84[ASN][1000 genomes]
rs4711325	0.88[ASN][1000 genomes]
rs4713625	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66840884	0.86[ASN][1000 genomes]
rs7382303	0.83[ASN][1000 genomes]
rs9357159	0.86[ASN][1000 genomes]
rs9380355	0.85[ASN][1000 genomes]
rs9461856	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33423400-33430800	Weak transcription	Gastric	stomach
2	chr6:33424200-33431200	Weak transcription	HepG2	liver
3	chr6:33424200-33439200	Weak transcription	Pancreas	Pancrea
4	chr6:33424600-33433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:33424600-33434400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:33425200-33429800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:33425400-33429600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:33425600-33434400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:33427400-33429600	Weak transcription	Fetal Brain Female	brain

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