Variant report

Variant	rs2772375
Chromosome Location	chr6:33431569-33431570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33424166..33426973-chr6:33429815..33431845,2	K562	blood:
2	chr6:33399216..33401242-chr6:33429198..33431670,2	K562	blood:
3	chr6:33425473..33427450-chr6:33429815..33431643,2	K562	blood:
4	chr6:33423454..33426241-chr6:33429192..33432961,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197283	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11757273	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12204193	0.83[ASN][1000 genomes]
rs1613451	0.89[ASN][1000 genomes]
rs1755045	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1755046	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1755047	0.89[ASN][1000 genomes]
rs1755048	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1755049	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2076775	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211456	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2247385	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274730	0.84[ASN][1000 genomes]
rs2480487	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2747477	0.83[ASN][1000 genomes]
rs2747479	0.83[ASN][1000 genomes]
rs2772373	0.87[ASN][1000 genomes]
rs2772376	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2772387	0.87[ASN][1000 genomes]
rs2772389	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2772390	0.87[ASN][1000 genomes]
rs2772391	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2772392	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3130025	0.87[ASN][1000 genomes]
rs371005	0.80[ASN][1000 genomes]
rs411136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs442745	0.83[ASN][1000 genomes]
rs453590	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4620113	0.83[ASN][1000 genomes]
rs4711325	0.90[ASN][1000 genomes]
rs4713625	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66840884	0.88[ASN][1000 genomes]
rs7382303	0.82[ASN][1000 genomes]
rs9357159	0.88[ASN][1000 genomes]
rs9380355	0.84[ASN][1000 genomes]
rs9461856	0.92[ASN][1000 genomes]
rs9767795	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2772375	HLA-DPB1	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33424200-33439200	Weak transcription	Pancreas	Pancrea
2	chr6:33424600-33433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:33424600-33434400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:33425600-33434400	Weak transcription	Duodenum Mucosa	Duodenum

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