Variant report

Variant	rs17551627
Chromosome Location	chr1:220002646-220002647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11803657	0.87[AMR][1000 genomes]
rs11805110	0.87[AMR][1000 genomes]
rs11805132	0.87[AMR][1000 genomes]
rs11808330	0.87[AMR][1000 genomes]
rs12067347	0.83[AMR][1000 genomes]
rs12072368	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12077018	0.84[ASN][1000 genomes]
rs13375416	0.87[AMR][1000 genomes]
rs17006699	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776050	1.00[JPT][hapmap]
rs2066418	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2378324	0.87[AMR][1000 genomes]
rs4308987	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55646081	0.95[AMR][1000 genomes]
rs55712001	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55753922	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55800251	0.87[AMR][1000 genomes]
rs55828554	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55882931	0.95[AMR][1000 genomes]
rs55920559	0.87[AMR][1000 genomes]
rs55931064	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55956414	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55977511	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55981027	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56073293	0.87[AMR][1000 genomes]
rs56105497	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56170642	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56213832	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56286098	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56331091	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57034259	0.82[AMR][1000 genomes]
rs58859585	0.87[AMR][1000 genomes]
rs60659404	0.87[AMR][1000 genomes]
rs60827853	0.87[AMR][1000 genomes]
rs6676773	0.87[AMR][1000 genomes]
rs6690503	0.82[AMR][1000 genomes]
rs6692539	0.84[ASN][1000 genomes]
rs72738726	0.95[AMR][1000 genomes]
rs72738731	0.95[AMR][1000 genomes]
rs72738733	0.95[AMR][1000 genomes]
rs72738744	0.95[AMR][1000 genomes]
rs72738745	0.87[AMR][1000 genomes]
rs72738747	0.95[AMR][1000 genomes]
rs72738748	0.87[AMR][1000 genomes]
rs72738750	0.87[AMR][1000 genomes]
rs72738751	0.87[AMR][1000 genomes]
rs72738753	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72738758	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72738763	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72738765	0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72738768	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72738769	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72738771	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72738772	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72738781	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139216	1.00[ASN][1000 genomes]
rs74139217	1.00[ASN][1000 genomes]
rs7533484	0.87[AMR][1000 genomes]
rs7535102	0.86[AMR][1000 genomes]
rs7535834	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1067840	chr1:219990803-220091941	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219999600-220006000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:219999800-220003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:220000000-220006600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:220000600-220006000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:220000600-220006000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:220000600-220006200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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