Variant report

Variant	rs60827853
Chromosome Location	chr1:219974057-219974058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11803657	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11805110	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11805132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11808330	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067347	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12072368	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077018	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13375416	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17006699	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17551627	0.87[AMR][1000 genomes]
rs2066418	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2378324	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4308987	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55646081	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55712001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55753922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55800251	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55828554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55882931	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55920559	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55931064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55956414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55977511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55981027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56073293	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56088885	0.90[AFR][1000 genomes]
rs56105497	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56170642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56213832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56286098	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57034259	0.98[EUR][1000 genomes]
rs58859585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60659404	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6676773	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690503	0.98[EUR][1000 genomes]
rs6692539	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738726	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738731	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738733	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738744	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738745	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738747	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738748	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738750	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738751	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738754	0.96[AFR][1000 genomes]
rs72738758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738765	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738768	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72738769	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72738771	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72738772	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72738781	0.82[AMR][1000 genomes]
rs7533484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7535102	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7535834	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv947518	chr1:219967913-219974435	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219966400-219980200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:219970200-219975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:219971600-219974200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:219972200-219985600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:219972800-219974200	Weak transcription	NHLF	lung
6	chr1:219973200-219974200	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:219973400-219975200	Enhancers	NHDF-Ad	bronchial
8	chr1:219973600-219974400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:219974000-219974600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:219974000-219974800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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