Variant report

Variant	rs1755833
Chromosome Location	chr6:57186294-57186295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57182975..57187891-chr6:57191602..57197743,6	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1013893	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1013894	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1019210	0.91[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.86[MKK][hapmap]
rs1029872	0.86[CHB][hapmap]
rs10733187	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs1119375	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs12664535	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs1618210	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1741916	0.91[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.85[MKK][hapmap];0.81[ASN][1000 genomes]
rs2013464	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2013480	0.87[CHB][hapmap]
rs2098172	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs2191651	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs2215511	0.86[CHB][hapmap]
rs3800015	0.95[CHB][hapmap]
rs4288209	0.86[CHB][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap]
rs4712144	0.91[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.86[MKK][hapmap];0.82[ASN][1000 genomes]
rs4712154	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs4715653	0.88[ASN][1000 genomes]
rs4715654	0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.81[MKK][hapmap];0.80[ASN][1000 genomes]
rs4715655	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4715656	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4715657	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6459191	0.81[ASN][1000 genomes]
rs6459193	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs7738530	0.86[CHB][hapmap]
rs7748584	0.81[CHB][hapmap]
rs7754116	0.86[ASN][1000 genomes]
rs7756422	0.86[CHB][hapmap]
rs7771738	0.90[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9357943	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9357944	0.95[CHB][hapmap];0.91[CHD][hapmap];0.88[ASN][1000 genomes]
rs9382701	0.88[ASN][1000 genomes]
rs9382736	0.90[CHB][hapmap]
rs9396278	0.95[CHB][hapmap];0.91[CHD][hapmap]
rs9464439	0.89[ASN][1000 genomes]
rs980327	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758056	chr6:57184541-57562604	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759432	chr6:57184541-57562604	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57182800-57191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:57182800-57192600	Weak transcription	Aorta	Aorta
3	chr6:57182800-57194200	Weak transcription	Small Intestine	intestine
4	chr6:57183000-57191400	Weak transcription	Lung	lung
5	chr6:57183000-57192600	Weak transcription	Esophagus	oesophagus
6	chr6:57183000-57194200	Weak transcription	Pancreas	Pancrea
7	chr6:57183000-57194200	Weak transcription	Spleen	Spleen
8	chr6:57183000-57194400	Weak transcription	Brain Substantia Nigra	brain
9	chr6:57183000-57194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:57183000-57199400	Weak transcription	HSMMtube	muscle
11	chr6:57183200-57186800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:57183200-57187200	Weak transcription	Stomach Mucosa	stomach
13	chr6:57183200-57187400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:57183200-57190000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:57183200-57190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:57183200-57190200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:57183200-57191400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:57183200-57191600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:57183200-57191800	Weak transcription	Gastric	stomach
20	chr6:57183200-57192000	Weak transcription	Fetal Brain Male	brain
21	chr6:57183200-57192600	Weak transcription	Colonic Mucosa	Colon
22	chr6:57183200-57192800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:57183200-57194400	Weak transcription	Psoas Muscle	Psoas
24	chr6:57183200-57199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:57183400-57190800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:57183400-57190800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:57183400-57191400	Weak transcription	Fetal Lung	lung
28	chr6:57183600-57191800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:57183600-57192200	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:57183800-57187400	Strong transcription	Placenta	Placenta
31	chr6:57183800-57187800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:57183800-57192600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:57183800-57192800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:57183800-57193400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:57183800-57194200	Strong transcription	Fetal Thymus	thymus
36	chr6:57184000-57186400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:57184000-57187800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr6:57184000-57188400	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:57184000-57188600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:57184000-57189200	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr6:57184000-57189400	Strong transcription	Primary hematopoietic stem cells	blood
42	chr6:57184000-57192200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:57184000-57192200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:57184000-57193200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:57184000-57194600	Strong transcription	Primary B cells from cord blood	blood
46	chr6:57184000-57195800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:57184200-57187200	Strong transcription	A549	lung
48	chr6:57184200-57187800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr6:57184200-57188000	Strong transcription	Left Ventricle	heart
50	chr6:57184200-57189000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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