Variant report

Variant	rs17559596
Chromosome Location	chr7:129555547-129555548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129552819..129555561-chr7:129563082..129564976,2	K562	blood:
2	chr7:129554834..129557816-chr7:129564035..129566068,2	MCF-7	breast:
3	chr7:129554701..129556404-chr7:129560749..129563135,2	MCF-7	breast:
4	chr7:129544543..129549195-chr7:129554830..129557453,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11760945	1.00[AFR][1000 genomes]
rs11766629	1.00[ASW][hapmap]
rs13242512	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17161487	1.00[ASW][hapmap]
rs71583738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71583745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129516200-129584400	Weak transcription	Fetal Brain Male	brain
2	chr7:129518200-129557200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:129518200-129564600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:129530000-129587600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:129541800-129559200	Weak transcription	Esophagus	oesophagus
6	chr7:129544800-129559400	Weak transcription	Lung	lung
7	chr7:129547000-129557200	Weak transcription	Colonic Mucosa	Colon
8	chr7:129547000-129563600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:129547400-129557000	Weak transcription	Fetal Lung	lung
10	chr7:129547400-129563600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:129547400-129576800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:129547600-129555600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:129547600-129558400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr7:129548000-129557600	Weak transcription	HepG2	liver
15	chr7:129548400-129562600	Weak transcription	Hela-S3	cervix
16	chr7:129548800-129557200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:129549000-129555600	Weak transcription	Liver	Liver
18	chr7:129549000-129556000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:129549200-129557200	Weak transcription	Fetal Brain Female	brain
20	chr7:129549200-129586800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:129549400-129555600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:129549400-129556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:129549400-129557400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:129549400-129580200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:129549600-129555600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:129549600-129556000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:129549800-129555600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:129549800-129572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:129549800-129577800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:129549800-129588200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:129550400-129560800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:129550600-129555800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:129551000-129557000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:129551400-129558600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr7:129552400-129556000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:129552400-129564600	Weak transcription	HMEC	breast
37	chr7:129552800-129563600	Weak transcription	A549	lung
38	chr7:129553000-129556400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:129553000-129559600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr7:129553200-129556000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:129553200-129560000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr7:129553200-129570000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:129553400-129555600	Enhancers	Right Ventricle	heart
44	chr7:129553400-129555800	Enhancers	Psoas Muscle	Psoas
45	chr7:129553400-129556600	Enhancers	Left Ventricle	heart
46	chr7:129553400-129557000	Enhancers	Primary T cells fromperipheralblood	blood
47	chr7:129553400-129557400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:129553400-129558000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr7:129553400-129559800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr7:129553400-129560000	Enhancers	Fetal Heart	heart

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