Variant report

Variant	rs11760945
Chromosome Location	chr7:129508029-129508030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129496945..129502202-chr7:129504422..129509630,7	K562	blood:
2	chr7:129505309..129508372-chr7:129515702..129517352,3	K562	blood:
3	chr7:129505309..129508372-chr7:129515622..129517311,3	K562	blood:

Variant related genes	Relation type
ENSG00000186591	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13242512	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17559596	1.00[AFR][1000 genomes]
rs34403102	0.86[EUR][1000 genomes]
rs35596978	0.81[EUR][1000 genomes]
rs71583738	1.00[AFR][1000 genomes]
rs71583745	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv366414	chr7:129504412-129512872	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129475000-129534800	Weak transcription	Colonic Mucosa	Colon
2	chr7:129479400-129543600	Weak transcription	Thymus	Thymus
3	chr7:129481400-129510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:129491600-129510000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:129492000-129509200	Weak transcription	Fetal Intestine Small	intestine
6	chr7:129493800-129510400	Weak transcription	Brain Germinal Matrix	brain
7	chr7:129494400-129518800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:129495400-129510400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr7:129495600-129517000	Weak transcription	Fetal Lung	lung
10	chr7:129496200-129509400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:129496400-129520400	Weak transcription	Fetal Brain Female	brain
12	chr7:129496800-129509600	Weak transcription	HepG2	liver
13	chr7:129496800-129510200	Weak transcription	Fetal Thymus	thymus
14	chr7:129497000-129513400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr7:129497000-129515800	Weak transcription	Placenta	Placenta
16	chr7:129497000-129536800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:129497200-129511200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:129499200-129517200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:129499800-129509600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:129501600-129509200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:129501600-129510600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:129501600-129511200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:129503000-129509800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:129503000-129513600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:129503000-129517200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:129503200-129508400	Weak transcription	Primary T cells from cord blood	blood
27	chr7:129503200-129509200	Weak transcription	Fetal Stomach	stomach
28	chr7:129503200-129509400	Weak transcription	Spleen	Spleen
29	chr7:129503200-129515600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:129503200-129515800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:129503200-129517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:129503200-129517200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:129503200-129519800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:129503200-129529000	Weak transcription	Gastric	stomach
35	chr7:129503400-129514400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:129503400-129515800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:129503400-129517200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:129503400-129538400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:129503600-129515600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr7:129503600-129515800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:129503800-129515400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:129504000-129510000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:129504000-129517800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr7:129504000-129518800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr7:129504200-129508600	Weak transcription	Fetal Muscle Leg	muscle
46	chr7:129504200-129509600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:129504200-129510200	Weak transcription	Esophagus	oesophagus
48	chr7:129504200-129515600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:129504200-129515600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:129504200-129515600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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