Variant report

Variant	rs34403102
Chromosome Location	chr7:129531967-129531968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129530188..129533667-chr7:129590811..129593880,3	K562	blood:
2	chr7:129531023..129532736-chr7:129534907..129537227,2	K562	blood:
3	chr7:129519995..129522504-chr7:129529822..129532750,2	K562	blood:
4	chr7:129525080..129527646-chr7:129530678..129533940,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244036	Chromatin interaction
ENSG00000186591	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11760945	0.86[EUR][1000 genomes]
rs13238927	0.83[EUR][1000 genomes]
rs13242512	0.90[EUR][1000 genomes]
rs35482241	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35596978	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129475000-129534800	Weak transcription	Colonic Mucosa	Colon
2	chr7:129479400-129543600	Weak transcription	Thymus	Thymus
3	chr7:129497000-129536800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:129503400-129538400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:129505600-129545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:129506000-129542800	Weak transcription	Small Intestine	intestine
7	chr7:129509600-129541000	Weak transcription	Spleen	Spleen
8	chr7:129510600-129541000	Weak transcription	Esophagus	oesophagus
9	chr7:129513200-129548600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:129516200-129542800	Weak transcription	HSMMtube	muscle
11	chr7:129516200-129584400	Weak transcription	Fetal Brain Male	brain
12	chr7:129517400-129543800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:129518000-129537200	Weak transcription	Brain Angular Gyrus	brain
14	chr7:129518000-129537200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:129518000-129545200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:129518200-129542600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:129518200-129557200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:129518200-129564600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:129518400-129536200	Weak transcription	Psoas Muscle	Psoas
20	chr7:129518400-129538000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:129519200-129535000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:129519400-129546400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:129519600-129546400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:129520800-129535000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:129520800-129535800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:129520800-129541400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:129520800-129545600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:129520800-129551200	Weak transcription	Placenta	Placenta
29	chr7:129521000-129532600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:129521000-129536400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:129521200-129537000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:129521200-129537800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:129522000-129537200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:129522000-129541000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:129522000-129548200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:129522600-129541000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:129522600-129542600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:129522600-129544600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:129522600-129547800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr7:129522600-129548400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:129522600-129548600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:129523000-129536400	Weak transcription	NHDF-Ad	bronchial
43	chr7:129523200-129541000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:129525400-129532800	Weak transcription	Primary B cells from cord blood	blood
45	chr7:129525400-129535000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:129525400-129538200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:129525400-129541000	Weak transcription	Fetal Muscle Leg	muscle
48	chr7:129525400-129541000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:129525800-129535000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr7:129526000-129548200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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