Variant report

Variant	rs35482241
Chromosome Location	chr7:129570148-129570149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34403102	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35596978	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129516200-129584400	Weak transcription	Fetal Brain Male	brain
2	chr7:129530000-129587600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:129547400-129576800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:129549200-129586800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:129549400-129580200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:129549800-129572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:129549800-129577800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:129549800-129588200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:129554000-129573800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:129555200-129587000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:129556600-129572800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:129556600-129579000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:129556600-129588000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr7:129557400-129587000	Weak transcription	Fetal Lung	lung
15	chr7:129557800-129572800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:129558000-129573400	Weak transcription	HSMMtube	muscle
17	chr7:129558000-129580200	Weak transcription	Aorta	Aorta
18	chr7:129558000-129584600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:129558000-129587600	Weak transcription	Brain Germinal Matrix	brain
20	chr7:129558200-129572800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:129559600-129576400	Weak transcription	Thymus	Thymus
22	chr7:129559600-129578800	Weak transcription	Pancreas	Pancrea
23	chr7:129559600-129580200	Weak transcription	Gastric	stomach
24	chr7:129559600-129580200	Weak transcription	Ovary	ovary
25	chr7:129559600-129581200	Weak transcription	Lung	lung
26	chr7:129559600-129588000	Weak transcription	Esophagus	oesophagus
27	chr7:129559800-129588600	Weak transcription	Colonic Mucosa	Colon
28	chr7:129563600-129572800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:129564000-129573200	Weak transcription	Hela-S3	cervix
30	chr7:129564000-129573400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:129564000-129580200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:129564200-129573400	Weak transcription	NHEK	skin
33	chr7:129564200-129577200	Weak transcription	HSMM	muscle
34	chr7:129564400-129586800	Weak transcription	A549	lung
35	chr7:129564600-129570200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr7:129564600-129573000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr7:129564800-129572400	Weak transcription	Primary B cells from cord blood	blood
38	chr7:129564800-129572800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:129564800-129573000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr7:129564800-129580200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr7:129564800-129580200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:129564800-129580200	Weak transcription	Small Intestine	intestine
43	chr7:129565200-129587400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:129565400-129587400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:129565600-129573000	Weak transcription	NHLF	lung
46	chr7:129565600-129573200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:129565600-129586400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:129565600-129587600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:129565600-129588200	Weak transcription	HMEC	breast
50	chr7:129565800-129571000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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