Variant report

Variant	rs1757172
Chromosome Location	chr6:37495267-37495268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1532488	0.93[AFR][1000 genomes]
rs1757167	0.93[AFR][1000 genomes]
rs2253392	0.93[AFR][1000 genomes]
rs2776902	0.93[AFR][1000 genomes]
rs2776909	0.93[AFR][1000 genomes]
rs2797776	0.82[AFR][1000 genomes]
rs2935900	0.93[AFR][1000 genomes]
rs904250	0.93[AFR][1000 genomes]
rs9470614	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37487600-37498200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:37489400-37502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:37489600-37502000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:37490800-37502000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:37491000-37495400	Weak transcription	GM12878-XiMat	blood
6	chr6:37491000-37503000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:37491200-37498800	Enhancers	Fetal Brain Male	brain
8	chr6:37491400-37496400	Weak transcription	Primary B cells from cord blood	blood
9	chr6:37491800-37495600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:37493200-37495600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:37493600-37495400	Weak transcription	Fetal Brain Female	brain
12	chr6:37493600-37496200	Weak transcription	Brain Germinal Matrix	brain
13	chr6:37493800-37495400	Enhancers	Fetal Thymus	thymus
14	chr6:37493800-37496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:37493800-37514000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:37495200-37495600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:37495200-37503000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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