Variant report

Variant	rs9470614
Chromosome Location	chr6:37492954-37492955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37483822..37487083-chr6:37490649..37493526,4	MCF-7	breast:
2	chr6:37490506..37492969-chr6:37501083..37503155,2	K562	blood:
3	chr6:37486519..37488969-chr6:37490130..37493160,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1532488	0.93[AFR][1000 genomes]
rs1757167	0.93[AFR][1000 genomes]
rs1757172	1.00[AFR][1000 genomes]
rs2253392	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2776902	0.93[AFR][1000 genomes]
rs2776909	0.93[AFR][1000 genomes]
rs2797776	0.82[AFR][1000 genomes]
rs2935900	0.93[AFR][1000 genomes]
rs904250	1.00[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37487600-37498200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:37489200-37493000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:37489400-37502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:37489600-37493600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37489600-37502000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:37489800-37493800	Weak transcription	Fetal Thymus	thymus
7	chr6:37490400-37493800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:37490800-37502000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:37491000-37493200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:37491000-37495400	Weak transcription	GM12878-XiMat	blood
11	chr6:37491000-37503000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:37491200-37498800	Enhancers	Fetal Brain Male	brain
13	chr6:37491400-37496400	Weak transcription	Primary B cells from cord blood	blood
14	chr6:37491800-37495600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:37492000-37493600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:37492000-37493600	Enhancers	NH-A	brain
17	chr6:37492400-37493000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:37492400-37493200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:37492400-37493600	Enhancers	Fetal Brain Female	brain
20	chr6:37492400-37495200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:37492600-37493600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:37492600-37493600	Enhancers	Hela-S3	cervix
23	chr6:37492600-37493600	Enhancers	HUVEC	blood vessel
24	chr6:37492800-37493200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:37492800-37493600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:37492800-37493600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:37492800-37493800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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