Variant report

Variant	rs175727
Chromosome Location	chr15:40147624-40147625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1684931	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969843	1.00[EUR][1000 genomes]
rs16969863	1.00[EUR][1000 genomes]
rs2164482	1.00[EUR][1000 genomes]
rs55633725	1.00[EUR][1000 genomes]
rs56058711	1.00[EUR][1000 genomes]
rs56933828	1.00[EUR][1000 genomes]
rs57014511	1.00[EUR][1000 genomes]
rs57761246	1.00[EUR][1000 genomes]
rs58280876	1.00[EUR][1000 genomes]
rs58367323	1.00[EUR][1000 genomes]
rs58436679	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58766307	1.00[EUR][1000 genomes]
rs592772	1.00[EUR][1000 genomes]
rs59701034	1.00[EUR][1000 genomes]
rs60642936	1.00[EUR][1000 genomes]
rs643897	1.00[EUR][1000 genomes]
rs644743	1.00[EUR][1000 genomes]
rs655289	1.00[EUR][1000 genomes]
rs7179252	1.00[EUR][1000 genomes]
rs74008875	1.00[EUR][1000 genomes]
rs74008885	1.00[EUR][1000 genomes]
rs74008889	1.00[EUR][1000 genomes]
rs74008890	1.00[EUR][1000 genomes]
rs74008974	1.00[EUR][1000 genomes]
rs74008978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
2	chr15:40138400-40162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:40142000-40149000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:40142200-40148200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:40142400-40148800	Enhancers	NHDF-Ad	bronchial
6	chr15:40142600-40148400	Enhancers	NHLF	lung
7	chr15:40142800-40148000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:40143600-40148600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:40143600-40148800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:40143600-40149200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr15:40144200-40152600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:40144800-40149400	Weak transcription	HUVEC	blood vessel
13	chr15:40145000-40147800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:40145600-40148800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:40145800-40152000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:40146000-40148200	Enhancers	Osteobl	bone
17	chr15:40146200-40148200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:40146600-40153800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:40146800-40154200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:40147000-40148000	Enhancers	Adipose Nuclei	Adipose
21	chr15:40147000-40149600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:40147000-40150400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:40147000-40150800	Weak transcription	HMEC	breast
24	chr15:40147200-40148200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:40147400-40147800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr15:40147400-40148200	Enhancers	HSMMtube	muscle
27	chr15:40147400-40148400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr15:40147400-40167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:40147600-40147800	Enhancers	HSMM	muscle
30	chr15:40147600-40148200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr15:40147600-40148200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:40147600-40148400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:40147600-40148600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr15:40147600-40148800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:40147600-40148800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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