Variant report

Variant	rs58436679
Chromosome Location	chr15:40142449-40142450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1684931	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16969843	1.00[EUR][1000 genomes]
rs16969863	1.00[EUR][1000 genomes]
rs175727	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2164482	1.00[EUR][1000 genomes]
rs55633725	1.00[EUR][1000 genomes]
rs56058711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56933828	1.00[EUR][1000 genomes]
rs57014511	1.00[EUR][1000 genomes]
rs57761246	1.00[EUR][1000 genomes]
rs58280876	1.00[EUR][1000 genomes]
rs58367323	1.00[EUR][1000 genomes]
rs58766307	1.00[EUR][1000 genomes]
rs592772	1.00[EUR][1000 genomes]
rs59701034	1.00[EUR][1000 genomes]
rs60642936	1.00[EUR][1000 genomes]
rs643897	1.00[EUR][1000 genomes]
rs644743	1.00[EUR][1000 genomes]
rs655289	1.00[EUR][1000 genomes]
rs7179252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74008875	1.00[EUR][1000 genomes]
rs74008885	1.00[EUR][1000 genomes]
rs74008889	1.00[EUR][1000 genomes]
rs74008890	1.00[EUR][1000 genomes]
rs74008974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74008978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40123400-40143200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
3	chr15:40123800-40143600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:40126400-40142600	Weak transcription	NHLF	lung
5	chr15:40127200-40142600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:40135200-40142800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:40138400-40143200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:40138400-40143600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:40138400-40162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:40138600-40143600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:40138600-40143600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:40138800-40142600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:40138800-40142600	Weak transcription	Osteobl	bone
14	chr15:40140600-40143600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:40140600-40145400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr15:40140800-40144200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:40142000-40146200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:40142000-40149000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:40142200-40142800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr15:40142200-40148200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:40142400-40142600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:40142400-40142800	Enhancers	HSMM	muscle
23	chr15:40142400-40148800	Enhancers	NHDF-Ad	bronchial

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