Variant report

Variant	rs17574609
Chromosome Location	chr6:131602968-131602969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10046185	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10080261	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs12110484	1.00[YRI][hapmap]
rs17651884	1.00[EUR][1000 genomes]
rs28706329	1.00[EUR][1000 genomes]
rs3777491	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs59991654	1.00[EUR][1000 genomes]
rs6929954	0.83[EUR][1000 genomes]
rs73775592	0.83[EUR][1000 genomes]
rs9321279	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9483231	1.00[EUR][1000 genomes]
rs9483232	1.00[EUR][1000 genomes]
rs9483234	1.00[EUR][1000 genomes]
rs9483235	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9483240	1.00[EUR][1000 genomes]
rs9492863	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9492872	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9492876	1.00[EUR][1000 genomes]
rs9492885	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv886665	chr6:131518894-131611309	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131571800-131603000	Weak transcription	Esophagus	oesophagus
2	chr6:131571800-131614400	Weak transcription	Gastric	stomach
3	chr6:131572200-131613000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:131573600-131610400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:131580600-131606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:131580800-131605000	Weak transcription	Fetal Heart	heart
7	chr6:131587400-131614400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:131590800-131610200	Weak transcription	Fetal Stomach	stomach
9	chr6:131591000-131614800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:131591200-131603000	Weak transcription	Aorta	Aorta
11	chr6:131591400-131610600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:131591800-131603400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:131597200-131613200	Weak transcription	Ovary	ovary
14	chr6:131601200-131612000	Weak transcription	HSMMtube	muscle
15	chr6:131601400-131603400	Enhancers	Fetal Brain Male	brain
16	chr6:131601400-131604400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:131601600-131603200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:131601600-131603200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:131601600-131603800	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:131601600-131604200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:131601800-131604800	Weak transcription	Pancreas	Pancrea
22	chr6:131602000-131603400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:131602200-131603000	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr6:131602200-131603200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:131602200-131603200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr6:131602200-131603200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:131602200-131603200	Genic enhancers	Fetal Intestine Small	intestine
28	chr6:131602200-131603200	Enhancers	Fetal Lung	lung
29	chr6:131602200-131603400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:131602200-131603400	Enhancers	Fetal Thymus	thymus
31	chr6:131602200-131603400	Enhancers	Dnd41	blood
32	chr6:131602200-131603400	Enhancers	HUVEC	blood vessel
33	chr6:131602400-131603000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr6:131602400-131603000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr6:131602400-131603000	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr6:131602400-131603000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:131602400-131603000	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr6:131602400-131603000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr6:131602400-131603000	Enhancers	NH-A	brain
40	chr6:131602400-131603200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:131602400-131603200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:131602400-131603200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr6:131602400-131603200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr6:131602400-131603200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr6:131602400-131603200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:131602400-131603200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:131602400-131603200	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr6:131602400-131603200	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr6:131602400-131603200	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr6:131602400-131603200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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