Variant report

Variant	rs6929954
Chromosome Location	chr6:131706052-131706053
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131614360..131616508-chr6:131705803..131707677,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10046185	0.83[EUR][1000 genomes]
rs10080261	1.00[TSI][hapmap]
rs17574609	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17651884	0.83[EUR][1000 genomes]
rs28706329	0.83[EUR][1000 genomes]
rs3777491	1.00[TSI][hapmap]
rs59991654	0.83[EUR][1000 genomes]
rs73775592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321279	0.83[EUR][1000 genomes]
rs9483231	0.83[EUR][1000 genomes]
rs9483232	0.83[EUR][1000 genomes]
rs9483234	0.83[EUR][1000 genomes]
rs9483235	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9483240	0.83[EUR][1000 genomes]
rs9492863	0.83[EUR][1000 genomes]
rs9492872	0.83[EUR][1000 genomes]
rs9492876	0.83[EUR][1000 genomes]
rs9492885	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131690000-131711200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:131700800-131706400	Enhancers	HSMMtube	muscle
3	chr6:131701600-131708800	Weak transcription	Osteobl	bone
4	chr6:131701800-131712400	Enhancers	Fetal Brain Male	brain
5	chr6:131703800-131707000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:131704000-131709400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:131704200-131708800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:131704600-131706200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:131704800-131706200	Enhancers	HSMM	muscle
10	chr6:131705000-131706200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:131705200-131707600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:131705400-131707400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:131705400-131708000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:131705400-131708200	Weak transcription	Esophagus	oesophagus
15	chr6:131705400-131709800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:131705600-131707000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:131705600-131708200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:131705600-131708400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:131705800-131707600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:131705800-131708000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:131705800-131708600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:131706000-131708000	Weak transcription	Fetal Brain Female	brain

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