Variant report

Variant	rs17574616
Chromosome Location	chr5:42436807-42436808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10059251	1.00[ASN][1000 genomes]
rs10440649	1.00[CHB][hapmap]
rs10941578	0.83[CEU][hapmap]
rs11740415	1.00[CHD][hapmap];0.80[GIH][hapmap]
rs11744988	1.00[CHD][hapmap]
rs11955075	1.00[CHD][hapmap];0.80[GIH][hapmap]
rs11957404	1.00[CHB][hapmap]
rs13153060	1.00[ASN][1000 genomes]
rs13154521	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13156541	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171720	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13180731	1.00[ASN][1000 genomes]
rs13182117	1.00[CHB][hapmap]
rs13184352	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs13187542	1.00[ASN][1000 genomes]
rs13188386	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354167	1.00[CHB][hapmap]
rs17574527	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17575164	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17636762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28943878	1.00[ASN][1000 genomes]
rs28943882	1.00[CHB][hapmap]
rs34126503	1.00[ASN][1000 genomes]
rs34161441	1.00[ASN][1000 genomes]
rs34305870	1.00[ASN][1000 genomes]
rs34714947	1.00[ASN][1000 genomes]
rs34975809	0.87[EUR][1000 genomes]
rs35003055	0.86[EUR][1000 genomes]
rs35185573	0.87[EUR][1000 genomes]
rs35331831	1.00[ASN][1000 genomes]
rs35418208	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500216	0.85[EUR][1000 genomes]
rs35585211	1.00[ASN][1000 genomes]
rs4129472	1.00[CHB][hapmap]
rs4129645	0.87[EUR][1000 genomes]
rs4242100	1.00[ASN][1000 genomes]
rs4242101	1.00[ASN][1000 genomes]
rs4292454	1.00[CHB][hapmap]
rs4320267	1.00[ASN][1000 genomes]
rs4365846	1.00[CHD][hapmap]
rs4395642	1.00[CHD][hapmap];0.80[GIH][hapmap]
rs4457090	1.00[ASN][1000 genomes]
rs4493680	0.81[CEU][hapmap]
rs4866836	1.00[ASN][1000 genomes]
rs56781446	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61043035	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451618	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67314897	1.00[ASN][1000 genomes]
rs67812331	0.87[EUR][1000 genomes]
rs67846180	1.00[ASN][1000 genomes]
rs6863381	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs6872878	1.00[ASN][1000 genomes]
rs6881929	1.00[CHD][hapmap]
rs6885716	1.00[ASN][1000 genomes]
rs6891036	1.00[ASN][1000 genomes]
rs72753062	1.00[ASN][1000 genomes]
rs72753064	1.00[ASN][1000 genomes]
rs7702524	1.00[CHB][hapmap]
rs7703669	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7709790	1.00[CHB][hapmap]
rs7715374	1.00[ASN][1000 genomes]
rs7716495	1.00[ASN][1000 genomes]
rs7718962	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7732059	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736209	1.00[CHD][hapmap];0.80[GIH][hapmap]
rs9292848	1.00[ASN][1000 genomes]
rs9292851	1.00[ASN][1000 genomes]
rs9292854	1.00[CHB][hapmap]
rs9763260	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv881375	chr5:42254097-42442715	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17574616	OR10V1	trans	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42430600-42438800	Weak transcription	Aorta	Aorta
2	chr5:42433000-42437000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr5:42433600-42437000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42434000-42437000	Enhancers	Liver	Liver
5	chr5:42435400-42446600	Weak transcription	Adipose Nuclei	Adipose
6	chr5:42435600-42438400	Weak transcription	Fetal Intestine Large	intestine
7	chr5:42436000-42437400	Enhancers	Fetal Lung	lung
8	chr5:42436200-42437400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:42436400-42447400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:42436600-42442200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:42436800-42437200	Weak transcription	Psoas Muscle	Psoas

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