Variant report

Variant	rs6451618
Chromosome Location	chr5:42433460-42433461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:42425732..42427236-chr5:42432145..42434745,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10059251	1.00[ASN][1000 genomes]
rs13153060	1.00[ASN][1000 genomes]
rs13154521	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13156541	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171720	1.00[ASN][1000 genomes]
rs13180731	1.00[ASN][1000 genomes]
rs13187542	1.00[ASN][1000 genomes]
rs13188386	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17574527	1.00[ASN][1000 genomes]
rs17574616	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17575164	1.00[ASN][1000 genomes]
rs17636762	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28943878	1.00[ASN][1000 genomes]
rs34126503	1.00[ASN][1000 genomes]
rs34161441	1.00[ASN][1000 genomes]
rs34305870	1.00[ASN][1000 genomes]
rs34714947	1.00[ASN][1000 genomes]
rs35331831	1.00[ASN][1000 genomes]
rs35418208	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35585211	1.00[ASN][1000 genomes]
rs4242100	1.00[ASN][1000 genomes]
rs4242101	1.00[ASN][1000 genomes]
rs4320267	1.00[ASN][1000 genomes]
rs4457090	1.00[ASN][1000 genomes]
rs4866836	1.00[ASN][1000 genomes]
rs56781446	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61043035	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67314897	1.00[ASN][1000 genomes]
rs67846180	1.00[ASN][1000 genomes]
rs6872878	1.00[ASN][1000 genomes]
rs6885716	1.00[ASN][1000 genomes]
rs6891036	1.00[ASN][1000 genomes]
rs72753062	1.00[ASN][1000 genomes]
rs72753064	1.00[ASN][1000 genomes]
rs7703669	1.00[ASN][1000 genomes]
rs7715374	1.00[ASN][1000 genomes]
rs7716495	1.00[ASN][1000 genomes]
rs7718962	1.00[ASN][1000 genomes]
rs7732059	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292848	1.00[ASN][1000 genomes]
rs9292851	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv881375	chr5:42254097-42442715	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42425600-42434200	Weak transcription	Left Ventricle	heart
2	chr5:42426600-42435200	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:42426600-42436000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:42430600-42438800	Weak transcription	Aorta	Aorta
5	chr5:42430800-42434000	Weak transcription	Liver	Liver
6	chr5:42431000-42433600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:42431800-42434800	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:42431800-42436000	Weak transcription	Fetal Lung	lung
9	chr5:42432800-42433800	Weak transcription	Psoas Muscle	Psoas
10	chr5:42433000-42435400	Enhancers	Adipose Nuclei	Adipose
11	chr5:42433000-42437000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:42433200-42433600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:42433200-42433600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links