Variant report

Variant	rs17574746
Chromosome Location	chr3:143032500-143032501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10935487	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1112189	0.94[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12488603	0.88[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs12493473	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17574671	0.94[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17636943	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17637467	0.83[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs6796961	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6799793	0.89[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs73008231	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143015200-143039600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143018400-143039400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143022400-143048200	Weak transcription	Psoas Muscle	Psoas
4	chr3:143025600-143040000	Weak transcription	Right Atrium	heart
5	chr3:143026600-143033200	Weak transcription	HSMM	muscle
6	chr3:143026600-143047400	Weak transcription	Spleen	Spleen
7	chr3:143026800-143032600	Weak transcription	Right Ventricle	heart
8	chr3:143027000-143032600	Weak transcription	Left Ventricle	heart
9	chr3:143029400-143045800	Weak transcription	Adipose Nuclei	Adipose
10	chr3:143029800-143045200	Weak transcription	Primary T cells from cord blood	blood
11	chr3:143030200-143032800	Weak transcription	Ovary	ovary
12	chr3:143030200-143033000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:143030200-143034600	Weak transcription	K562	blood
14	chr3:143031200-143033000	Weak transcription	HSMMtube	muscle
15	chr3:143031200-143034200	Enhancers	Dnd41	blood
16	chr3:143032000-143033000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:143032000-143034400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:143032200-143033800	Enhancers	Fetal Thymus	thymus
19	chr3:143032400-143033000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:143032400-143033800	Enhancers	Fetal Muscle Trunk	muscle
21	chr3:143032400-143033800	Enhancers	Fetal Muscle Leg	muscle
22	chr3:143032400-143034600	Enhancers	Fetal Lung	lung
23	chr3:143032400-143035000	Enhancers	NHDF-Ad	bronchial

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