Variant report

Variant	rs6796961
Chromosome Location	chr3:143025851-143025852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143022335..143023905-chr3:143024400..143026913,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10935487	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1112189	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12488603	0.82[EUR][1000 genomes]
rs12493473	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17574671	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17574746	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17636943	0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs6799793	0.82[EUR][1000 genomes]
rs73008231	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv520125	chr3:143020870-143029022	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143015200-143039600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143018200-143026400	Weak transcription	GM12878-XiMat	blood
3	chr3:143018400-143039400	Weak transcription	Primary B cells from cord blood	blood
4	chr3:143019600-143026600	Enhancers	Fetal Lung	lung
5	chr3:143021000-143026600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:143021200-143029000	Weak transcription	Primary T cells from cord blood	blood
7	chr3:143021600-143026400	Weak transcription	Lung	lung
8	chr3:143021800-143029000	Weak transcription	Fetal Kidney	kidney
9	chr3:143022000-143026200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:143022000-143026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:143022000-143026400	Weak transcription	NH-A	brain
12	chr3:143022000-143032400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:143022200-143026400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:143022400-143026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:143022400-143032200	Weak transcription	Fetal Thymus	thymus
16	chr3:143022400-143048200	Weak transcription	Psoas Muscle	Psoas
17	chr3:143022600-143026200	Weak transcription	Adipose Nuclei	Adipose
18	chr3:143022600-143026400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:143022600-143026600	Weak transcription	Dnd41	blood
20	chr3:143022600-143027600	Weak transcription	Placenta	Placenta
21	chr3:143022600-143030000	Weak transcription	HSMMtube	muscle
22	chr3:143022800-143026400	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:143023800-143026200	Enhancers	K562	blood
24	chr3:143024000-143027200	Enhancers	HUVEC	blood vessel
25	chr3:143024200-143027000	Enhancers	Stomach Mucosa	stomach
26	chr3:143024600-143027000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:143025000-143026000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:143025000-143026400	Enhancers	Liver	Liver
29	chr3:143025000-143026600	Enhancers	Duodenum Mucosa	Duodenum
30	chr3:143025000-143026800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr3:143025000-143026800	Enhancers	HMEC	breast
32	chr3:143025000-143027000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:143025000-143027000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:143025000-143027000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr3:143025000-143027800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:143025200-143026600	Enhancers	HSMM	muscle
37	chr3:143025400-143026400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr3:143025600-143026000	Weak transcription	NHDF-Ad	bronchial
39	chr3:143025600-143026200	Weak transcription	Left Ventricle	heart
40	chr3:143025600-143026400	Weak transcription	Esophagus	oesophagus
41	chr3:143025600-143026400	Weak transcription	Ovary	ovary
42	chr3:143025600-143026400	Enhancers	Placenta Amnion	Placenta Amnion
43	chr3:143025600-143026600	Enhancers	Spleen	Spleen
44	chr3:143025600-143027000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:143025600-143040000	Weak transcription	Right Atrium	heart
46	chr3:143025800-143026800	Enhancers	Right Ventricle	heart
47	chr3:143025800-143027000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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