The 2.0 version of rSNPBase

Variant report

Variant rs17580172
Chromosome Location chr4:148997552-148997553
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:148966600-149003800 Weak transcription NH-A brain
2 chr4:148968400-149004000 Weak transcription HUVEC blood vessel
3 chr4:148982000-149001200 Weak transcription Placenta Amnion Placenta Amnion
4 chr4:148984200-149003400 Weak transcription Stomach Mucosa stomach
5 chr4:148988800-149004400 Weak transcription Brain Anterior Caudate brain
6 chr4:148989400-148997800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr4:148991200-148997600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr4:148992000-148997800 Weak transcription Right Atrium heart
9 chr4:148992200-149035000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr4:148993400-148998000 Strong transcription Muscle Satellite Cultured Cells --
11 chr4:148993400-148999200 Strong transcription Ovary ovary
12 chr4:148993600-148998200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr4:148993600-148998200 Strong transcription HSMM muscle
14 chr4:148993600-148998600 Strong transcription Colon Smooth Muscle Colon
15 chr4:148994200-148998000 ZNF genes & repeats Primary T helper 17 cells PMA-I stimulated --
16 chr4:148994200-149004800 Weak transcription Brain Substantia Nigra brain
17 chr4:148994400-148999200 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
18 chr4:148994600-148998400 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
19 chr4:148994600-148998600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
20 chr4:148994600-149002200 Weak transcription NHDF-Ad bronchial
21 chr4:148994600-149003000 Weak transcription HMEC breast
22 chr4:148994800-148998600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
23 chr4:148995200-148997600 ZNF genes & repeats Fetal Intestine Small intestine
24 chr4:148995200-148998000 ZNF genes & repeats Primary T cells effector/memory enriched fromperipheralblood blood
25 chr4:148995400-148998600 ZNF genes & repeats Liver Liver
26 chr4:148995600-148997600 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr4:148995600-148998000 ZNF genes & repeats Lung lung
28 chr4:148995600-148998400 ZNF genes & repeats Adipose Nuclei Adipose
29 chr4:148995600-148998600 ZNF genes & repeats Fetal Stomach stomach
30 chr4:148995600-148998600 Strong transcription Gastric stomach
31 chr4:148995600-149003200 Weak transcription Osteobl bone
32 chr4:148996200-148998800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr4:148996200-148999600 Strong transcription Rectal Smooth Muscle rectum
34 chr4:148996200-149002200 Weak transcription Colonic Mucosa Colon
35 chr4:148996400-148998000 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr4:148996400-148998200 Weak transcription Psoas Muscle Psoas
37 chr4:148996600-148997600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr4:148996600-148998000 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr4:148996600-148999600 Strong transcription Fetal Muscle Trunk muscle
40 chr4:148996600-149002800 Strong transcription Duodenum Mucosa Duodenum
41 chr4:148996600-149004200 Weak transcription GM12878-XiMat blood
42 chr4:148996600-149004200 Weak transcription NHEK skin
43 chr4:148996800-148997800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr4:148996800-148998000 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr4:148996800-148998200 Strong transcription Aorta Aorta
46 chr4:148996800-149001000 Strong transcription Fetal Muscle Leg muscle
47 chr4:148996800-149002800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr4:148997000-148997800 Strong transcription Pancreas Pancrea
49 chr4:148997000-148998000 Weak transcription Fetal Heart heart
50 chr4:148997000-148998000 Strong transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015