Variant report

Variant	rs72724400
Chromosome Location	chr4:148930000-148930001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148927798..148930770-chr4:148933790..148935681,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10018805	1.00[ASN][1000 genomes]
rs10519945	1.00[ASN][1000 genomes]
rs12511893	1.00[ASN][1000 genomes]
rs17580172	1.00[ASN][1000 genomes]
rs17580639	1.00[ASN][1000 genomes]
rs3846303	1.00[ASN][1000 genomes]
rs5533	1.00[ASN][1000 genomes]
rs61764573	1.00[AFR][1000 genomes]
rs6848375	1.00[ASN][1000 genomes]
rs72726605	1.00[AFR][1000 genomes]
rs72726656	1.00[AFR][1000 genomes]
rs72728411	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148885600-148939000	Weak transcription	Pancreas	Pancrea
2	chr4:148889200-148936200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:148911600-148936200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:148913600-148933200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:148918000-148968000	Weak transcription	Gastric	stomach
6	chr4:148918200-148937000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:148921000-148930600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:148921000-148930800	Weak transcription	GM12878-XiMat	blood
9	chr4:148921000-148945000	Weak transcription	Esophagus	oesophagus
10	chr4:148921200-148932400	Weak transcription	Fetal Stomach	stomach
11	chr4:148927000-148930000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:148927200-148930000	Enhancers	Left Ventricle	heart
13	chr4:148927800-148930000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:148928200-148930000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:148928400-148930000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:148928400-148930000	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:148928800-148965400	Weak transcription	Lung	lung
18	chr4:148929000-148930000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:148929000-148930200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:148929200-148930000	Enhancers	HUVEC	blood vessel
21	chr4:148929200-148930000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr4:148929200-148955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:148929400-148930000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:148929400-148930000	Enhancers	NHLF	lung
25	chr4:148929400-148930200	Enhancers	Hela-S3	cervix
26	chr4:148929400-148932400	Weak transcription	Aorta	Aorta
27	chr4:148929400-148938400	Weak transcription	Fetal Heart	heart
28	chr4:148929400-148942800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:148929600-148944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:148929600-148944400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:148929800-148932200	Weak transcription	NHDF-Ad	bronchial
32	chr4:148929800-148932600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:148929800-148933000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr4:148929800-148935200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:148929800-148936200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:148929800-148936200	Weak transcription	Ovary	ovary
37	chr4:148929800-148936400	Weak transcription	Psoas Muscle	Psoas
38	chr4:148929800-148936400	Weak transcription	Right Atrium	heart
39	chr4:148929800-148936400	Weak transcription	Right Ventricle	heart
40	chr4:148929800-148937000	Weak transcription	HSMM	muscle
41	chr4:148929800-148944400	Weak transcription	HSMMtube	muscle
42	chr4:148929800-148947200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr4:148930000-148930400	Weak transcription	Left Ventricle	heart
44	chr4:148930000-148932000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:148930000-148935800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr4:148930000-148939000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:148930000-148944400	Weak transcription	NHLF	lung
48	chr4:148930000-148947600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links