Variant report

Variant	rs72728411
Chromosome Location	chr4:149144315-149144316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61760313	1.00[AFR][1000 genomes]
rs61760320	1.00[AFR][1000 genomes]
rs61764573	1.00[AFR][1000 genomes]
rs72724400	1.00[AFR][1000 genomes]
rs72726605	1.00[AFR][1000 genomes]
rs72726656	1.00[AFR][1000 genomes]
rs907621	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
2	chr4:149138400-149157800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:149138600-149150200	Weak transcription	Ovary	ovary
4	chr4:149138600-149157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:149138800-149144600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:149138800-149150400	Weak transcription	Fetal Intestine Large	intestine
7	chr4:149139000-149157200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:149139800-149145600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:149140000-149170800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:149143400-149144600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:149143800-149144400	Enhancers	Liver	Liver
12	chr4:149144000-149145600	Weak transcription	Brain Anterior Caudate	brain
13	chr4:149144000-149146400	Enhancers	Stomach Mucosa	stomach
14	chr4:149144200-149144600	Enhancers	Gastric	stomach
15	chr4:149144200-149144600	Enhancers	Left Ventricle	heart
16	chr4:149144200-149144600	Flanking Active TSS	Pancreas	Pancrea
17	chr4:149144200-149144800	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr4:149144200-149147800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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