Variant report

Variant	rs72726605
Chromosome Location	chr4:148973186-148973187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61764573	1.00[AFR][1000 genomes]
rs72724377	1.00[AMR][1000 genomes]
rs72724400	1.00[AFR][1000 genomes]
rs72726656	1.00[AFR][1000 genomes]
rs72728411	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148939400-148978600	Weak transcription	Ovary	ovary
2	chr4:148947600-148980800	Weak transcription	Pancreas	Pancrea
3	chr4:148948600-148978000	Weak transcription	NHLF	lung
4	chr4:148952000-148993600	Weak transcription	NHDF-Ad	bronchial
5	chr4:148960000-148993200	Weak transcription	Thymus	Thymus
6	chr4:148963200-148975400	Weak transcription	Fetal Intestine Small	intestine
7	chr4:148963600-148981800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:148964000-148974800	Weak transcription	Fetal Kidney	kidney
9	chr4:148964000-148978200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:148964400-148975200	Weak transcription	Fetal Intestine Large	intestine
11	chr4:148964400-148977200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:148965400-148978000	Weak transcription	Brain Substantia Nigra	brain
13	chr4:148965400-148984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:148965800-148973200	Weak transcription	Fetal Thymus	thymus
15	chr4:148965800-148974000	Weak transcription	Lung	lung
16	chr4:148965800-148974600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:148965800-148981000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:148966000-148974600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:148966200-148978000	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:148966400-148977800	Weak transcription	NHEK	skin
21	chr4:148966400-148979800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:148966600-148973200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr4:148966600-149003800	Weak transcription	NH-A	brain
24	chr4:148967200-148977200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:148968000-148973600	Weak transcription	Stomach Mucosa	stomach
26	chr4:148968400-148973800	Weak transcription	Gastric	stomach
27	chr4:148968400-149004000	Weak transcription	HUVEC	blood vessel
28	chr4:148968600-148978200	Weak transcription	Esophagus	oesophagus
29	chr4:148968800-148973600	Weak transcription	Liver	Liver
30	chr4:148968800-148973800	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:148968800-148973800	Weak transcription	Right Ventricle	heart
32	chr4:148968800-148975200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:148968800-148978000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:148968800-148978000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:148968800-148980400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:148969600-148978200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:148970000-148973800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:148970000-148974200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:148970000-148974400	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:148970000-148977800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:148970000-148978200	Weak transcription	Brain Anterior Caudate	brain
42	chr4:148970000-148985800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:148970200-148974800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr4:148970400-148985800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:148970600-148974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:148970600-148974400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr4:148970600-148974800	Weak transcription	Aorta	Aorta
48	chr4:148970600-148975400	Weak transcription	Adipose Nuclei	Adipose
49	chr4:148970800-148973800	Weak transcription	HSMMtube	muscle
50	chr4:148970800-148974800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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