Variant report

Variant	rs61760320
Chromosome Location	chr4:149214286-149214287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149213309..149216201-chr4:149362737..149365342,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11099688	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11936376	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17581570	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2356210	0.82[AMR][1000 genomes]
rs2883929	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3857084	0.80[EUR][1000 genomes]
rs60565904	0.80[EUR][1000 genomes]
rs61760313	1.00[AFR][1000 genomes]
rs61760317	0.82[AMR][1000 genomes]
rs61764573	1.00[AFR][1000 genomes]
rs72726656	1.00[AFR][1000 genomes]
rs72728411	1.00[AFR][1000 genomes]
rs7689925	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs907621	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
3	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart
4	chr4:149209800-149214600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:149209800-149216600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:149210000-149214800	Weak transcription	Ovary	ovary
7	chr4:149210000-149216600	Weak transcription	Pancreas	Pancrea
8	chr4:149210000-149220600	Weak transcription	Gastric	stomach
9	chr4:149211200-149214600	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:149211200-149215000	Weak transcription	Small Intestine	intestine
11	chr4:149211200-149220600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:149211400-149214400	Weak transcription	Fetal Intestine Large	intestine
13	chr4:149211400-149216400	Weak transcription	Left Ventricle	heart
14	chr4:149211400-149216600	Weak transcription	Psoas Muscle	Psoas
15	chr4:149213000-149215200	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:149213600-149215200	Enhancers	Liver	Liver
17	chr4:149213600-149215400	Enhancers	Duodenum Mucosa	Duodenum
18	chr4:149213800-149215400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:149213800-149216200	Enhancers	Fetal Intestine Small	intestine
20	chr4:149214000-149215200	Enhancers	Fetal Kidney	kidney
21	chr4:149214000-149215400	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr4:149214200-149214600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:149214200-149214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:149214200-149214800	Weak transcription	Rectal Mucosa Donor 31	rectum

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