Variant report

Variant	rs61760317
Chromosome Location	chr4:149209705-149209706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11099688	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11936376	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17581570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2356210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2883929	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857084	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60565904	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61760320	0.82[AMR][1000 genomes]
rs7689925	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:149204800-149210800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:149205600-149209800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:149205600-149211000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:149206000-149209800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:149206000-149211000	Weak transcription	Fetal Intestine Large	intestine
7	chr4:149206000-149211000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:149206400-149210800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
10	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart
11	chr4:149207000-149211600	Enhancers	Fetal Heart	heart
12	chr4:149207200-149213600	Weak transcription	Liver	Liver
13	chr4:149207800-149209800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:149208600-149209800	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:149208600-149211000	Weak transcription	Brain Anterior Caudate	brain
16	chr4:149208600-149211000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:149208600-149211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:149208600-149214000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:149208800-149212000	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr4:149209000-149209800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:149209000-149210200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr4:149209200-149209800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr4:149209200-149210200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr4:149209200-149210200	Enhancers	Small Intestine	intestine
25	chr4:149209400-149209800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr4:149209400-149210000	Enhancers	Colonic Mucosa	Colon
27	chr4:149209600-149209800	Enhancers	Brain Cingulate Gyrus	brain
28	chr4:149209600-149210000	Enhancers	Aorta	Aorta
29	chr4:149209600-149210000	Enhancers	Gastric	stomach
30	chr4:149209600-149210000	Enhancers	Left Ventricle	heart
31	chr4:149209600-149210000	Enhancers	Ovary	ovary
32	chr4:149209600-149210000	Enhancers	Pancreas	Pancrea
33	chr4:149209600-149210200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:149209600-149210200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:149209600-149210200	Enhancers	Brain Germinal Matrix	brain
36	chr4:149209600-149210200	Enhancers	HSMM	muscle
37	chr4:149209600-149211200	Enhancers	Colon Smooth Muscle	Colon
38	chr4:149209600-149211200	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr4:149209600-149211400	Enhancers	Psoas Muscle	Psoas
40	chr4:149209600-149211600	Enhancers	Stomach Mucosa	stomach

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