Variant report

Variant	rs17587435
Chromosome Location	chr4:166450955-166450956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11934265	1.00[EUR][1000 genomes]
rs11935370	1.00[EUR][1000 genomes]
rs17046645	1.00[EUR][1000 genomes]
rs17046648	1.00[EUR][1000 genomes]
rs17046652	1.00[EUR][1000 genomes]
rs17046654	1.00[EUR][1000 genomes]
rs17046656	1.00[EUR][1000 genomes]
rs17046676	1.00[EUR][1000 genomes]
rs17046679	1.00[EUR][1000 genomes]
rs17046681	1.00[EUR][1000 genomes]
rs17503167	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1914846	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1914847	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1914848	0.95[EUR][1000 genomes]
rs55899871	1.00[EUR][1000 genomes]
rs56113715	1.00[EUR][1000 genomes]
rs57104235	1.00[EUR][1000 genomes]
rs58195470	1.00[EUR][1000 genomes]
rs6812968	0.95[EUR][1000 genomes]
rs6835679	0.95[EUR][1000 genomes]
rs72978122	1.00[EUR][1000 genomes]
rs72978128	1.00[EUR][1000 genomes]
rs72978133	1.00[EUR][1000 genomes]
rs7664515	1.00[EUR][1000 genomes]
rs7664890	1.00[EUR][1000 genomes]
rs7664983	1.00[EUR][1000 genomes]
rs7665408	0.92[EUR][1000 genomes]
rs7689185	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166438800-166462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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