Variant report

Variant	rs1914848
Chromosome Location	chr4:166457426-166457427
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166457407..166458582-chr4:167012763..167013739,5	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11934265	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11935370	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046645	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046648	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046652	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046654	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046656	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046676	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046679	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17046681	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17503167	1.00[CEU][hapmap]
rs17587435	0.95[EUR][1000 genomes]
rs1914846	0.97[EUR][1000 genomes]
rs1914847	0.91[EUR][1000 genomes]
rs55899871	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56113715	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57104235	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58195470	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6812968	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6835679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978122	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72978128	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72978133	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7664515	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7664890	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7664983	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7665408	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7689185	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv980520	chr4:166454479-166464670	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv596052	chr4:166454826-166488615	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166438800-166462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166457400-166457600	Enhancers	Colon Smooth Muscle	Colon

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