Variant report

Variant	rs17589998
Chromosome Location	chr6:140228132-140228133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11751210	1.00[JPT][hapmap]
rs11756192	1.00[JPT][hapmap]
rs11758188	1.00[JPT][hapmap]
rs17069446	1.00[JPT][hapmap]
rs17516817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes]
rs17755520	1.00[JPT][hapmap]
rs17811871	1.00[JPT][hapmap]
rs17812617	1.00[JPT][hapmap]
rs17812647	1.00[JPT][hapmap]
rs1890428	1.00[JPT][hapmap]
rs2144168	1.00[JPT][hapmap]
rs477737	1.00[JPT][hapmap]
rs4895580	1.00[JPT][hapmap]
rs4896498	1.00[AMR][1000 genomes]
rs4896500	1.00[AMR][1000 genomes]
rs4896502	1.00[JPT][hapmap]
rs656363	1.00[JPT][hapmap]
rs6913694	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140224000-140228200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:140224800-140228200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:140226200-140228400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:140227000-140228400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:140227000-140247600	Weak transcription	Small Intestine	intestine
6	chr6:140227400-140228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:140227400-140228400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:140227400-140238600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:140227600-140239200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:140228000-140239200	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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