Variant report

Variant	rs4896498
Chromosome Location	chr6:140210555-140210556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140209627..140212034-chr6:140215859..140218280,2	K562	blood:
2	chr6:140202515..140205528-chr6:140208165..140211710,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1028472	1.00[ASN][1000 genomes]
rs11751210	1.00[JPT][hapmap]
rs11756192	1.00[JPT][hapmap]
rs11758188	1.00[JPT][hapmap]
rs17069446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17069449	1.00[ASN][1000 genomes]
rs17069457	1.00[ASN][1000 genomes]
rs17069468	1.00[ASN][1000 genomes]
rs17069477	0.87[ASN][1000 genomes]
rs17516817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17589998	1.00[AMR][1000 genomes]
rs17755520	1.00[JPT][hapmap]
rs17811871	1.00[JPT][hapmap]
rs17812617	1.00[JPT][hapmap]
rs17812647	1.00[JPT][hapmap]
rs1890428	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1963700	1.00[ASN][1000 genomes]
rs2144168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs477737	1.00[JPT][hapmap]
rs4895575	1.00[ASN][1000 genomes]
rs4895576	1.00[ASN][1000 genomes]
rs4895577	0.85[ASN][1000 genomes]
rs4895580	1.00[JPT][hapmap]
rs4896497	1.00[ASN][1000 genomes]
rs4896499	1.00[ASN][1000 genomes]
rs4896500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896502	1.00[JPT][hapmap]
rs56690523	1.00[ASN][1000 genomes]
rs60716022	1.00[ASN][1000 genomes]
rs656363	1.00[JPT][hapmap]
rs6570385	1.00[ASN][1000 genomes]
rs6570386	1.00[ASN][1000 genomes]
rs6908754	0.94[ASN][1000 genomes]
rs6913694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6921596	1.00[ASN][1000 genomes]
rs6921645	1.00[ASN][1000 genomes]
rs73563232	1.00[ASN][1000 genomes]
rs73563265	1.00[ASN][1000 genomes]
rs73563279	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140202400-140211800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:140203400-140212600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:140203600-140211000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:140204600-140213200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:140206800-140210800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:140207200-140211400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:140208200-140211000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:140208400-140211000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:140209000-140211000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:140209000-140211000	Enhancers	Fetal Heart	heart
11	chr6:140209000-140212400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:140209200-140210800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:140209600-140210600	Enhancers	HSMM	muscle
14	chr6:140209800-140210600	Enhancers	NHDF-Ad	bronchial
15	chr6:140210000-140210600	Enhancers	Brain Anterior Caudate	brain
16	chr6:140210000-140211000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:140210200-140211200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:140210200-140212600	Weak transcription	NHLF	lung
19	chr6:140210400-140211200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:140210400-140211400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:140210400-140211400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:140210400-140211600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:140210400-140211800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:140210400-140211800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:140210400-140215600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:140210400-140215800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:140210400-140216000	Weak transcription	H1 Cell Line	embryonic stem cell

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