Variant report

Variant	rs17594338
Chromosome Location	chr5:93180544-93180545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10780124	0.83[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11135400	0.82[JPT][hapmap]
rs17314423	0.93[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs2167763	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs316123	0.84[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs6881286	0.84[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs700560	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs7737964	1.00[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
2	chr5:93174400-93216800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93174800-93181400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:93175000-93183400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:93177400-93209200	Weak transcription	Gastric	stomach
6	chr5:93179200-93181800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:93179600-93181400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:93179600-93181400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr5:93179800-93180800	ZNF genes & repeats	Left Ventricle	heart
10	chr5:93179800-93181000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr5:93179800-93181400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr5:93179800-93181600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr5:93179800-93182000	ZNF genes & repeats	Dnd41	blood
14	chr5:93180000-93181400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:93180000-93181600	ZNF genes & repeats	Liver	Liver
16	chr5:93180000-93181800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr5:93180200-93181400	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr5:93180200-93193600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:93180400-93180600	ZNF genes & repeats	Fetal Kidney	kidney
20	chr5:93180400-93180800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:93180400-93180800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
22	chr5:93180400-93181200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr5:93180400-93181400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr5:93180400-93181600	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr5:93180400-93181600	ZNF genes & repeats	Fetal Lung	lung
26	chr5:93180400-93181600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr5:93180400-93181800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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